No. words: 1053; after pruning: 1027


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.7 (1,1:469)  422  2.55 0.00 0.21  UCD021F_A05_BG605258Ta21P025C05P012H081F2_047.ab1        1   470 (50)  C UCD021R_A05_BG605258Ta21P025C05P012H081R2_047.ab1   (64)   469     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  198 nodes

 101 str. conn. components

Path
    1  C UCD021R_A05_BG605258Ta21P025C05P012H081R2_047.ab1   533 
   73    UCD021F_A05_BG605258Ta21P025C05P012H081F2_047.ab1     9 
   81  C UCD021R_A05_BG605258Ta21P025C05P012H081R2_047.ab1   453 
   97    UCD021F_A05_BG605258Ta21P025C05P012H081F2_047.ab1    33 
  105  C UCD021R_A05_BG605258Ta21P025C05P012H081R2_047.ab1   429 
  113    UCD021F_A05_BG605258Ta21P025C05P012H081F2_047.ab1    49 
  117  C UCD021R_A05_BG605258Ta21P025C05P012H081R2_047.ab1   417 
  121    UCD021F_A05_BG605258Ta21P025C05P012H081F2_047.ab1    57 
  125  C UCD021R_A05_BG605258Ta21P025C05P012H081R2_047.ab1   409 
  144    UCD021F_A05_BG605258Ta21P025C05P012H081F2_047.ab1    80 
  160  C UCD021R_A05_BG605258Ta21P025C05P012H081R2_047.ab1   374 
  168    UCD021F_A05_BG605258Ta21P025C05P012H081F2_047.ab1   104 
  172  C UCD021R_A05_BG605258Ta21P025C05P012H081R2_047.ab1   362 
  192    UCD021F_A05_BG605258Ta21P025C05P012H081F2_047.ab1   128 
  196  C UCD021R_A05_BG605258Ta21P025C05P012H081R2_047.ab1   338 
  215    UCD021F_A05_BG605258Ta21P025C05P012H081F2_047.ab1   151 
  223  C UCD021R_A05_BG605258Ta21P025C05P012H081R2_047.ab1   311 
  227    UCD021F_A05_BG605258Ta21P025C05P012H081F2_047.ab1   163 
  235  C UCD021R_A05_BG605258Ta21P025C05P012H081R2_047.ab1   299 
  247    UCD021F_A05_BG605258Ta21P025C05P012H081F2_047.ab1   183 
  251  C UCD021R_A05_BG605258Ta21P025C05P012H081R2_047.ab1   283 
  259    UCD021F_A05_BG605258Ta21P025C05P012H081F2_047.ab1   195 
  271  C UCD021R_A05_BG605258Ta21P025C05P012H081R2_047.ab1   263 
  404    UCD021F_A05_BG605258Ta21P025C05P012H081F2_047.ab1   340 
  408  C UCD021R_A05_BG605258Ta21P025C05P012H081R2_047.ab1   126 
  517    UCD021F_A05_BG605258Ta21P025C05P012H081F2_047.ab1   453 
Contig length: old 583, new 584

Contig length: old 584, new 584
New start: 0