No. words: 1210; after pruning: 1171


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:486)  469  0.21 0.00 0.21  UCD021F_C05_BG605258Ta23P025C05P012H081F2_043.ab1        1   487 (48)  C UCD021R_C05_BG605258Ta23P025C05P012H081R2_043.ab1   (51)   486     1 *
Merge:(0)    1    0.0 0.4 (2,1:10)  110  5.19 0.74 0.00  UCD021F_C05_BG605258Ta23P025C05P012H081F2_043.ab1       12   146 (389)    UCD011F_E08_BG605258Ta23P025C05P012H081F1_056.ab1        1   136 (2) *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 1       1        0

Offset
  0       1 
  1       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  314 nodes

 131 str. conn. components

Path
    1  C UCD021R_C05_BG605258Ta23P025C05P012H081R2_043.ab1   537 
  447    UCD021F_C05_BG605258Ta23P025C05P012H081F2_043.ab1   396 
  451  C UCD021R_C05_BG605258Ta23P025C05P012H081R2_043.ab1    87 
  521    UCD021F_C05_BG605258Ta23P025C05P012H081F2_043.ab1   470 
Contig length: old 585, new 586

Contig length: old 586, new 586
New start: 0