No. words: 1012; after pruning: 986


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:474)  448  0.43 0.00 0.00  UCD014F_B08_BG605258Td02P025A05P012H081F1_062.ab1       13   475 (74)  C UCD014R_B08_BG605258Td02P025A05P012H081R1_062.ab1   (0)   463     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1    UCD014F_B08_BG605258Td02P025A05P012H081F1_062.ab1     1 
   71  C UCD014R_B08_BG605258Td02P025A05P012H081R1_062.ab1   405 
   87    UCD014F_B08_BG605258Td02P025A05P012H081F1_062.ab1    87 
  131  C UCD014R_B08_BG605258Td02P025A05P012H081R1_062.ab1   345 
  135    UCD014F_B08_BG605258Td02P025A05P012H081F1_062.ab1   135 
  139  C UCD014R_B08_BG605258Td02P025A05P012H081R1_062.ab1   337 
  147    UCD014F_B08_BG605258Td02P025A05P012H081F1_062.ab1   147 
  151  C UCD014R_B08_BG605258Td02P025A05P012H081R1_062.ab1   325 
  155    UCD014F_B08_BG605258Td02P025A05P012H081F1_062.ab1   155 
  191  C UCD014R_B08_BG605258Td02P025A05P012H081R1_062.ab1   285 
  259    UCD014F_B08_BG605258Td02P025A05P012H081F1_062.ab1   259 
  275  C UCD014R_B08_BG605258Td02P025A05P012H081R1_062.ab1   201 
  359    UCD014F_B08_BG605258Td02P025A05P012H081F1_062.ab1   359 
  363  C UCD014R_B08_BG605258Td02P025A05P012H081R1_062.ab1   113 
  471    UCD014F_B08_BG605258Td02P025A05P012H081F1_062.ab1   471 
Contig length: old 549, new 549

Contig length: old 549, new 549
New start: 0