No. words: 1044; after pruning: 1018


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.2 (1,1:474)  461  0.42 0.00 0.00  UCD014F_D08_BG605258Td04P025A05P012H081F1_058.ab1        1   475 (77)  C UCD014R_D08_BG605258Td04P025A05P012H081R1_058.ab1   (17)   475     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C UCD014R_D08_BG605258Td04P025A05P012H081R1_058.ab1   492 
   21    UCD014F_D08_BG605258Td04P025A05P012H081F1_058.ab1     4 
  139  C UCD014R_D08_BG605258Td04P025A05P012H081R1_058.ab1   354 
  203    UCD014F_D08_BG605258Td04P025A05P012H081F1_058.ab1   186 
  207  C UCD014R_D08_BG605258Td04P025A05P012H081R1_058.ab1   286 
  243    UCD014F_D08_BG605258Td04P025A05P012H081F1_058.ab1   226 
  251  C UCD014R_D08_BG605258Td04P025A05P012H081R1_058.ab1   242 
  423    UCD014F_D08_BG605258Td04P025A05P012H081F1_058.ab1   406 
  439  C UCD014R_D08_BG605258Td04P025A05P012H081R1_058.ab1    54 
  471    UCD014F_D08_BG605258Td04P025A05P012H081F1_058.ab1   454 
  483  C UCD014R_D08_BG605258Td04P025A05P012H081R1_058.ab1    10 
  487    UCD014F_D08_BG605258Td04P025A05P012H081F1_058.ab1   470 
Contig length: old 569, new 569

Contig length: old 569, new 569
New start: 0