No. words: 2105; after pruning: 2053


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.3 (1,1:8)  508  0.19 0.00 0.00  UCD011F_B06_BG605258Td04P025C05P012H081F1_046.ab1        9   528 (0)    UCD021F_H02_BG605258Td04P025C05P012H081F2_002.ab1        1   520 (0) *
Merge:(0)    0    0.0 11.2 (1,1:0)  507  0.19 0.00 0.00  UCD011R_B06_BG605258Td04P025C05P012H081R1_046.ab1        1   518 (0)    UCD021R_H02_BG605258Td04P025C05P012H081R2_002.ab1        1   518 (21) *
Merge:(0)    0    0.0 9.9 (2,2:476)  454  0.21 0.21 0.00  UCD011R_B06_BG605258Td04P025C05P012H081R1_046.ab1        1   469 (49)  C UCD021F_H02_BG605258Td04P025C05P012H081F2_002.ab1   (50)   470     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       3        0

Offset
  0       2 
  1       4 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1424 nodes

 483 str. conn. components

Path
    1  C UCD011F_B06_BG605258Td04P025C05P012H081F1_046.ab1   528 
    4  C UCD021F_H02_BG605258Td04P025C05P012H081F2_002.ab1   517 
   16  C UCD011F_B06_BG605258Td04P025C05P012H081F1_046.ab1   513 
   32  C UCD021F_H02_BG605258Td04P025C05P012H081F2_002.ab1   489 
   36  C UCD011F_B06_BG605258Td04P025C05P012H081F1_046.ab1   493 
   44  C UCD021F_H02_BG605258Td04P025C05P012H081F2_002.ab1   477 
   48  C UCD011F_B06_BG605258Td04P025C05P012H081F1_046.ab1   481 
   54  C UCD021F_H02_BG605258Td04P025C05P012H081F2_002.ab1   467 
   58  C UCD011F_B06_BG605258Td04P025C05P012H081F1_046.ab1   471 
   64  C UCD021F_H02_BG605258Td04P025C05P012H081F2_002.ab1   457 
   65    UCD011R_B06_BG605258Td04P025C05P012H081R1_046.ab1    14 
  108  C UCD021F_H02_BG605258Td04P025C05P012H081F2_002.ab1   413 
  109    UCD011R_B06_BG605258Td04P025C05P012H081R1_046.ab1    58 
  160    UCD021R_H02_BG605258Td04P025C05P012H081R2_002.ab1   109 
  176    UCD011R_B06_BG605258Td04P025C05P012H081R1_046.ab1   125 
  192    UCD021R_H02_BG605258Td04P025C05P012H081R2_002.ab1   141 
  196    UCD011R_B06_BG605258Td04P025C05P012H081R1_046.ab1   145 
  231    UCD021R_H02_BG605258Td04P025C05P012H081R2_002.ab1   180 
  236    UCD011R_B06_BG605258Td04P025C05P012H081R1_046.ab1   185 
  276    UCD021R_H02_BG605258Td04P025C05P012H081R2_002.ab1   225 
  280    UCD011R_B06_BG605258Td04P025C05P012H081R1_046.ab1   229 
  344    UCD021R_H02_BG605258Td04P025C05P012H081R2_002.ab1   293 
  352    UCD011R_B06_BG605258Td04P025C05P012H081R1_046.ab1   301 
  412    UCD021R_H02_BG605258Td04P025C05P012H081R2_002.ab1   361 
  423    UCD011R_B06_BG605258Td04P025C05P012H081R1_046.ab1   372 
  495    UCD021R_H02_BG605258Td04P025C05P012H081R2_002.ab1   444 
Contig length: old 590, new 590

Contig length: old 590, new 590
New start: 0