No. words: 1058; after pruning: 1032


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.6 (1,1:481)  462  0.41 0.00 0.21  UCD021F_A03_BG605258Td05P025C05P012H081F2_031.ab1        1   482 (44)  C UCD021R_A03_BG605258Td05P025C05P012H081R2_031.ab1   (51)   481     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C UCD021R_A03_BG605258Td05P025C05P012H081R2_031.ab1   532 
  525    UCD021F_A03_BG605258Td05P025C05P012H081F2_031.ab1   475 
Contig length: old 576, new 576

Contig length: old 576, new 577
New start: 0 
I Change at: 524; seg lengths: entry 1, contig 0