No. words: 856; after pruning: 830


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 7.3 (1,1:475)  360  1.06 0.00 0.00  UCD014F_F08_BG605258Td06P025A05P012H081F1_054.ab1       56   433 (0)  C UCD014R_F08_BG605258Td06P025A05P012H081R1_054.ab1   (2)   421    44 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  178 nodes

 91 str. conn. components

Path
    1    UCD014F_F08_BG605258Td06P025A05P012H081F1_054.ab1     1 
   76  C UCD014R_F08_BG605258Td06P025A05P012H081R1_054.ab1   401 
  104    UCD014F_F08_BG605258Td06P025A05P012H081F1_054.ab1   104 
  112  C UCD014R_F08_BG605258Td06P025A05P012H081R1_054.ab1   365 
  124    UCD014F_F08_BG605258Td06P025A05P012H081F1_054.ab1   124 
  128  C UCD014R_F08_BG605258Td06P025A05P012H081R1_054.ab1   349 
  148    UCD014F_F08_BG605258Td06P025A05P012H081F1_054.ab1   148 
  152  C UCD014R_F08_BG605258Td06P025A05P012H081R1_054.ab1   325 
  164    UCD014F_F08_BG605258Td06P025A05P012H081F1_054.ab1   164 
  172  C UCD014R_F08_BG605258Td06P025A05P012H081R1_054.ab1   305 
  176    UCD014F_F08_BG605258Td06P025A05P012H081F1_054.ab1   176 
  184  C UCD014R_F08_BG605258Td06P025A05P012H081R1_054.ab1   293 
Contig length: old 476, new 476

Contig length: old 476, new 476
New start: 0