No. words: 1062; after pruning: 1036


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.1 (1,1:489)  473  0.20 0.00 0.20  UCD021F_B03_BG605258Td06P025C05P012H081F2_029.ab1        1   490 (43)  C UCD021R_B03_BG605258Td06P025C05P012H081R2_029.ab1   (40)   489     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C UCD021R_B03_BG605258Td06P025C05P012H081R2_029.ab1   529 
  472    UCD021F_B03_BG605258Td06P025C05P012H081F2_029.ab1   432 
  476  C UCD021R_B03_BG605258Td06P025C05P012H081R2_029.ab1    54 
  522    UCD021F_B03_BG605258Td06P025C05P012H081F2_029.ab1   483 
Contig length: old 572, new 572

Contig length: old 572, new 573
New start: 0 
I Change at: 521; seg lengths: entry 1, contig 0