No. words: 1173; after pruning: 1134


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:490)  471  0.41 0.00 0.20  UCD021F_C03_BG605258Td07P025C05P012H081F2_027.ab1        1   491 (44)  C UCD021R_C03_BG605258Td07P025C05P012H081R2_027.ab1   (40)   490     1 *
Merge:(0)    0    0.0 1.6 (2,1:22)   97  2.78 0.00 0.00  UCD021R_C03_BG605258Td07P025C05P012H081R2_027.ab1      362   469 (61)  C UCD011F_E06_BG605258Td07P025C05P012H081F1_040.ab1   (0)   108     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       1 
  1       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  320 nodes

 135 str. conn. components

Path
    1  C UCD021R_C03_BG605258Td07P025C05P012H081R2_027.ab1   530 
  388    UCD021F_C03_BG605258Td07P025C05P012H081F2_027.ab1   348 
  392  C UCD021R_C03_BG605258Td07P025C05P012H081R2_027.ab1   139 
  396    UCD021F_C03_BG605258Td07P025C05P012H081F2_027.ab1   356 
  400  C UCD021R_C03_BG605258Td07P025C05P012H081R2_027.ab1   131 
  440    UCD021F_C03_BG605258Td07P025C05P012H081F2_027.ab1   400 
  452  C UCD021R_C03_BG605258Td07P025C05P012H081R2_027.ab1    79 
  472    UCD021F_C03_BG605258Td07P025C05P012H081F2_027.ab1   432 
  476  C UCD021R_C03_BG605258Td07P025C05P012H081R2_027.ab1    55 
  480    UCD021F_C03_BG605258Td07P025C05P012H081F2_027.ab1   440 
  495  C UCD021R_C03_BG605258Td07P025C05P012H081R2_027.ab1    36 
  515    UCD021F_C03_BG605258Td07P025C05P012H081F2_027.ab1   475 
Contig length: old 574, new 575

Contig length: old 575, new 575
New start: 0