No. words: 1052; after pruning: 1026


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.0 (1,1:491)  471  0.81 0.00 0.00  UCD014F_B10_BG605258Td10P025A05P012H081F1_078.ab1        2   492 (56)  C UCD014R_B10_BG605258Td10P025A05P012H081R1_078.ab1   (13)   491     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C UCD014R_B10_BG605258Td10P025A05P012H081R1_078.ab1   504 
   17    UCD014F_B10_BG605258Td10P025A05P012H081F1_078.ab1     5 
   89  C UCD014R_B10_BG605258Td10P025A05P012H081R1_078.ab1   416 
   97    UCD014F_B10_BG605258Td10P025A05P012H081F1_078.ab1    85 
  113  C UCD014R_B10_BG605258Td10P025A05P012H081R1_078.ab1   392 
  121    UCD014F_B10_BG605258Td10P025A05P012H081F1_078.ab1   109 
  145  C UCD014R_B10_BG605258Td10P025A05P012H081R1_078.ab1   360 
  153    UCD014F_B10_BG605258Td10P025A05P012H081F1_078.ab1   141 
  161  C UCD014R_B10_BG605258Td10P025A05P012H081R1_078.ab1   344 
  165    UCD014F_B10_BG605258Td10P025A05P012H081F1_078.ab1   153 
  169  C UCD014R_B10_BG605258Td10P025A05P012H081R1_078.ab1   336 
  173    UCD014F_B10_BG605258Td10P025A05P012H081F1_078.ab1   161 
  209  C UCD014R_B10_BG605258Td10P025A05P012H081R1_078.ab1   296 
  221    UCD014F_B10_BG605258Td10P025A05P012H081F1_078.ab1   209 
  233  C UCD014R_B10_BG605258Td10P025A05P012H081R1_078.ab1   272 
  273    UCD014F_B10_BG605258Td10P025A05P012H081F1_078.ab1   261 
  293  C UCD014R_B10_BG605258Td10P025A05P012H081R1_078.ab1   212 
  313    UCD014F_B10_BG605258Td10P025A05P012H081F1_078.ab1   301 
  321  C UCD014R_B10_BG605258Td10P025A05P012H081R1_078.ab1   184 
  325    UCD014F_B10_BG605258Td10P025A05P012H081F1_078.ab1   313 
  333  C UCD014R_B10_BG605258Td10P025A05P012H081R1_078.ab1   172 
  357    UCD014F_B10_BG605258Td10P025A05P012H081F1_078.ab1   345 
  377  C UCD014R_B10_BG605258Td10P025A05P012H081R1_078.ab1   128 
  389    UCD014F_B10_BG605258Td10P025A05P012H081F1_078.ab1   377 
  417  C UCD014R_B10_BG605258Td10P025A05P012H081R1_078.ab1    88 
  425    UCD014F_B10_BG605258Td10P025A05P012H081F1_078.ab1   413 
  429  C UCD014R_B10_BG605258Td10P025A05P012H081R1_078.ab1    76 
  441    UCD014F_B10_BG605258Td10P025A05P012H081F1_078.ab1   429 
  449  C UCD014R_B10_BG605258Td10P025A05P012H081R1_078.ab1    56 
  453    UCD014F_B10_BG605258Td10P025A05P012H081F1_078.ab1   441 
  469  C UCD014R_B10_BG605258Td10P025A05P012H081R1_078.ab1    36 
  489    UCD014F_B10_BG605258Td10P025A05P012H081F1_078.ab1   477 
Contig length: old 560, new 560

Contig length: old 560, new 560
New start: 0