No. words: 1497; after pruning: 1471


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.7 (1,1:1400)   86  3.12 0.00 0.00  UCD002F_C11_BG606636LD01P001D04D101F1_082.ab1      621   716 (0)  C UCD002R_C11_BG606636LD01P001D04D101R1_082.ab1   (0)   781   686 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  42 nodes

 23 str. conn. components

Path
    1    UCD002F_C11_BG606636LD01P001D04D101F1_082.ab1     1 
  662  C UCD002R_C11_BG606636LD01P001D04D101R1_082.ab1   740 
  670    UCD002F_C11_BG606636LD01P001D04D101F1_082.ab1   670 
  678  C UCD002R_C11_BG606636LD01P001D04D101R1_082.ab1   724 
  695    UCD002F_C11_BG606636LD01P001D04D101F1_082.ab1   695 
  699  C UCD002R_C11_BG606636LD01P001D04D101R1_082.ab1   703 
Contig length: old 1401, new 1401

Contig length: old 1401, new 1401
New start: 0 
S Change at: 646; seg lengths: entry 1, contig 1