No. words: 1485; after pruning: 1459


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.6 (1,1:1386)   90  1.01 0.00 1.01  UCD002F_D11_BG606636LD02P001D04D101F1_090.ab1      623   721 (0)  C UCD002R_D11_BG606636LD02P001D04D101R1_090.ab1   (0)   764   667 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  44 nodes

 24 str. conn. components

Path
    1    UCD002F_D11_BG606636LD02P001D04D101F1_090.ab1     1 
  630  C UCD002R_D11_BG606636LD02P001D04D101R1_090.ab1   757 
  634    UCD002F_D11_BG606636LD02P001D04D101F1_090.ab1   634 
  659  C UCD002R_D11_BG606636LD02P001D04D101R1_090.ab1   729 
  663    UCD002F_D11_BG606636LD02P001D04D101F1_090.ab1   663 
  667  C UCD002R_D11_BG606636LD02P001D04D101R1_090.ab1   721 
  702    UCD002F_D11_BG606636LD02P001D04D101F1_090.ab1   702 
  706  C UCD002R_D11_BG606636LD02P001D04D101R1_090.ab1   682 
Contig length: old 1387, new 1387

Contig length: old 1387, new 1387
New start: 0 
S Change at: 674; seg lengths: entry 1, contig 1