No. words: 702; after pruning: 676


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.4 (1,1:199)  195  0.00 0.00 0.00  UCD002F_A12_BG606636LD06P001D04D101F1_085.ab1        1   200 (122)  C UCD002R_A12_BG606636LD06P001D04D101R1_085.ab1   (180)   200     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  102 nodes

 53 str. conn. components

Path
    1  C UCD002R_A12_BG606636LD06P001D04D101R1_085.ab1   380 
  224    UCD002F_A12_BG606636LD06P001D04D101F1_085.ab1    44 
  236  C UCD002R_A12_BG606636LD06P001D04D101R1_085.ab1   145 
  280    UCD002F_A12_BG606636LD06P001D04D101F1_085.ab1   100 
Contig length: old 502, new 502

Contig length: old 502, new 502
New start: 0