No. words: 1413; after pruning: 1387


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.1 (1,1:1354)   53  0.00 0.00 1.69  UCD002F_E10_BG606636TU01P001D04D101F1_071.ab1      590   648 (0)  C UCD002R_E10_BG606636TU01P001D04D101R1_071.ab1   (0)   765   708 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  28 nodes

 16 str. conn. components

Path
    1    UCD002F_E10_BG606636TU01P001D04D101F1_071.ab1     1 
  593  C UCD002R_E10_BG606636TU01P001D04D101R1_071.ab1   762 
  597    UCD002F_E10_BG606636TU01P001D04D101F1_071.ab1   597 
  633  C UCD002R_E10_BG606636TU01P001D04D101R1_071.ab1   723 
  637    UCD002F_E10_BG606636TU01P001D04D101F1_071.ab1   637 
  641  C UCD002R_E10_BG606636TU01P001D04D101R1_071.ab1   715 
Contig length: old 1355, new 1355

Contig length: old 1355, new 1355
New start: 0