No. words: 725; after pruning: 676


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.8 (1,1:416)  247  5.48 0.00 0.00  UCD006R_D07_BG606762AT02P012A05P012A111F1_057.ab1      126   417 (16)  C UCD006F_D07_BG606762AT02P012A05P012A111F1_057.ab1   (0)   292     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  110 nodes

 57 str. conn. components

Path
    1    UCD006R_D07_BG606762AT02P012A05P012A111F1_057.ab1     1 
  294  C UCD006F_D07_BG606762AT02P012A05P012A111F1_057.ab1   124 
  322    UCD006R_D07_BG606762AT02P012A05P012A111F1_057.ab1   322 
  326  C UCD006F_D07_BG606762AT02P012A05P012A111F1_057.ab1    92 
  402    UCD006R_D07_BG606762AT02P012A05P012A111F1_057.ab1   402 
Contig length: old 433, new 433

Contig length: old 433, new 433
New start: 0 
S Change at: 408; seg lengths: entry 1, contig 1