No. words: 1254; after pruning: 1228


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.2 (1,1:461)  460  0.00 0.00 0.00  UCD006R_E07_BG606762LD01P012A05P012A111F1_055.ab1        1   462 (203)  C UCD006F_E07_BG606762LD01P012A05P012A111F1_055.ab1   (127)   462     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C UCD006F_E07_BG606762LD01P012A05P012A111F1_055.ab1   589 
  171    UCD006R_E07_BG606762LD01P012A05P012A111F1_055.ab1    44 
  547  C UCD006F_E07_BG606762LD01P012A05P012A111F1_055.ab1    43 
  551    UCD006R_E07_BG606762LD01P012A05P012A111F1_055.ab1   424 
Contig length: old 792, new 792

Contig length: old 792, new 792
New start: 0