No. words: 1269; after pruning: 1243


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:483)  473  0.00 0.21 0.21  UCD006R_F07_BG606762LD02P012A05P012A111F1_053.ab1        1   484 (180)  C UCD006F_F07_BG606762LD02P012A05P012A111F1_053.ab1   (121)   484     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C UCD006F_F07_BG606762LD02P012A05P012A111F1_053.ab1   605 
  482    UCD006R_F07_BG606762LD02P012A05P012A111F1_053.ab1   360 
  542  C UCD006F_F07_BG606762LD02P012A05P012A111F1_053.ab1    64 
  550    UCD006R_F07_BG606762LD02P012A05P012A111F1_053.ab1   428 
Contig length: old 785, new 786

Contig length: old 786, new 786
New start: 0