No. words: 1267; after pruning: 1241


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.2 (1,1:480)  467  0.00 0.21 0.21  UCD006R_A08_BG606762LD05P012A05P012A111F1_064.ab1        4   481 (180)  C UCD006F_A08_BG606762LD05P012A05P012A111F1_064.ab1   (128)   478     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C UCD006F_A08_BG606762LD05P012A05P012A111F1_064.ab1   606 
  155    UCD006R_A08_BG606762LD05P012A05P012A111F1_064.ab1    29 
  163  C UCD006F_A08_BG606762LD05P012A05P012A111F1_064.ab1   444 
  199    UCD006R_A08_BG606762LD05P012A05P012A111F1_064.ab1    73 
  207  C UCD006F_A08_BG606762LD05P012A05P012A111F1_064.ab1   400 
  475    UCD006R_A08_BG606762LD05P012A05P012A111F1_064.ab1   349 
Contig length: old 786, new 787

Contig length: old 787, new 787
New start: 0