No. words: 1266; after pruning: 1240


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:477)  467  0.00 0.21 0.21  UCD006R_B08_BG606762LD06P012A05P012A111F1_062.ab1        1   478 (180)  C UCD006F_B08_BG606762LD06P012A05P012A111F1_062.ab1   (130)   478     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C UCD006F_B08_BG606762LD06P012A05P012A111F1_062.ab1   608 
  189    UCD006R_B08_BG606762LD06P012A05P012A111F1_062.ab1    58 
  209  C UCD006F_B08_BG606762LD06P012A05P012A111F1_062.ab1   400 
  277    UCD006R_B08_BG606762LD06P012A05P012A111F1_062.ab1   146 
  381  C UCD006F_B08_BG606762LD06P012A05P012A111F1_062.ab1   228 
  445    UCD006R_B08_BG606762LD06P012A05P012A111F1_062.ab1   314 
  525  C UCD006F_B08_BG606762LD06P012A05P012A111F1_062.ab1    84 
  529    UCD006R_B08_BG606762LD06P012A05P012A111F1_062.ab1   398 
Contig length: old 788, new 789

Contig length: old 789, new 789
New start: 0