No. words: 1235; after pruning: 1209


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:470)  460  0.00 0.21 0.21  UCD006R_C08_BG606762LD07P012A05P012A111F1_060.ab1        1   471 (187)  C UCD006F_C08_BG606762LD07P012A05P012A111F1_060.ab1   (106)   471     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C UCD006F_C08_BG606762LD07P012A05P012A111F1_060.ab1   577 
  137    UCD006R_C08_BG606762LD07P012A05P012A111F1_060.ab1    30 
  141  C UCD006F_C08_BG606762LD07P012A05P012A111F1_060.ab1   437 
  257    UCD006R_C08_BG606762LD07P012A05P012A111F1_060.ab1   150 
  521  C UCD006F_C08_BG606762LD07P012A05P012A111F1_060.ab1    57 
  529    UCD006R_C08_BG606762LD07P012A05P012A111F1_060.ab1   422 
Contig length: old 764, new 765

Contig length: old 765, new 765
New start: 0