No. words: 1258; after pruning: 1232


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:470)  460  0.00 0.21 0.21  UCD006R_D08_BG606762LD08P012A05P012A111F1_058.ab1        1   471 (189)  C UCD006F_D08_BG606762LD08P012A05P012A111F1_058.ab1   (127)   471     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C UCD006F_D08_BG606762LD08P012A05P012A111F1_058.ab1   598 
  154    UCD006R_D08_BG606762LD08P012A05P012A111F1_058.ab1    26 
  206  C UCD006F_D08_BG606762LD08P012A05P012A111F1_058.ab1   393 
  410    UCD006R_D08_BG606762LD08P012A05P012A111F1_058.ab1   282 
  542  C UCD006F_D08_BG606762LD08P012A05P012A111F1_058.ab1    57 
  550    UCD006R_D08_BG606762LD08P012A05P012A111F1_058.ab1   422 
Contig length: old 787, new 788

Contig length: old 788, new 788
New start: 0