No. words: 1243; after pruning: 1217


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.0 (1,1:466)  456  0.00 0.21 0.21  UCD006R_G08_BG606762LD11P012A05P012A111F1_052.ab1        1   467 (179)  C UCD006F_G08_BG606762LD11P012A05P012A111F1_052.ab1   (130)   467     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C UCD006F_G08_BG606762LD11P012A05P012A111F1_052.ab1   597 
  157    UCD006R_G08_BG606762LD11P012A05P012A111F1_052.ab1    26 
  209  C UCD006F_G08_BG606762LD11P012A05P012A111F1_052.ab1   389 
  445    UCD006R_G08_BG606762LD11P012A05P012A111F1_052.ab1   314 
  525  C UCD006F_G08_BG606762LD11P012A05P012A111F1_052.ab1    73 
  529    UCD006R_G08_BG606762LD11P012A05P012A111F1_052.ab1   398 
  545  C UCD006F_G08_BG606762LD11P012A05P012A111F1_052.ab1    53 
  553    UCD006R_G08_BG606762LD11P012A05P012A111F1_052.ab1   422 
Contig length: old 776, new 777

Contig length: old 777, new 777
New start: 0