No. words: 1099; after pruning: 1060


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.7 (1,1:-8)  366  1.06 0.00 0.00  UCD011F_B12_BG606762Sn24P012A05P025F071F1_094.ab1        1   379 (0)    UCD021F_H08_BG606762Sn24P012A05P025F071F2_050.ab1        9   387 (8) *
Merge:(0)    0    0.0 6.1 (2,1:332)  312  1.23 0.00 0.00  UCD021F_H08_BG606762Sn24P012A05P025F071F2_050.ab1       17   341 (54)  C UCD021R_H08_BG606762Sn24P012A05P025F071R2_050.ab1   (0)   325     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       3 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  466 nodes

 109 str. conn. components

Path
    1    UCD021F_H08_BG606762Sn24P012A05P025F071F2_050.ab1     1 
   36    UCD011F_B12_BG606762Sn24P012A05P025F071F1_094.ab1    28 
   56    UCD021F_H08_BG606762Sn24P012A05P025F071F2_050.ab1    56 
   88    UCD011F_B12_BG606762Sn24P012A05P025F071F1_094.ab1    80 
   96    UCD021F_H08_BG606762Sn24P012A05P025F071F2_050.ab1    96 
  104    UCD011F_B12_BG606762Sn24P012A05P025F071F1_094.ab1    96 
  108    UCD021F_H08_BG606762Sn24P012A05P025F071F2_050.ab1   108 
  124    UCD011F_B12_BG606762Sn24P012A05P025F071F1_094.ab1   116 
  132    UCD021F_H08_BG606762Sn24P012A05P025F071F2_050.ab1   132 
  140    UCD011F_B12_BG606762Sn24P012A05P025F071F1_094.ab1   132 
  156    UCD021F_H08_BG606762Sn24P012A05P025F071F2_050.ab1   156 
  164    UCD011F_B12_BG606762Sn24P012A05P025F071F1_094.ab1   156 
  172    UCD021F_H08_BG606762Sn24P012A05P025F071F2_050.ab1   172 
  232  C UCD021R_H08_BG606762Sn24P012A05P025F071R2_050.ab1   110 
  236    UCD021F_H08_BG606762Sn24P012A05P025F071F2_050.ab1   236 
  304  C UCD021R_H08_BG606762Sn24P012A05P025F071R2_050.ab1    38 
  316    UCD021F_H08_BG606762Sn24P012A05P025F071F2_050.ab1   316 
  317  C UCD021R_H08_BG606762Sn24P012A05P025F071R2_050.ab1    25 
  324    UCD021F_H08_BG606762Sn24P012A05P025F071F2_050.ab1   324 
Contig length: old 395, new 395

Contig length: old 395, new 395
New start: 0