No. words: 1080; after pruning: 1041 Histogram of relative pair offsets, for read pairs with multiple alignments: Pass 1 Gap Score Pass: 1 #reads #contigs (not counting singlets) 1 3 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Pass 3 Gap Score Merge:(0) 13 0.0 5.7 (1,1:1) 353 1.34 0.00 0.27 UCD011F_D12_BG606762Sn30P012A05P025F071F1_090.ab1 1 374 (16) UCD021F_B09_BG606762Sn30P012A05P025F071F2_077.ab1 1 373 (13) * Merge:(0) 4 0.0 3.5 (2,1:332) 293 0.67 0.00 0.00 UCD021F_B09_BG606762Sn30P012A05P025F071F2_077.ab1 29 328 (58) C UCD021R_B09_BG606762Sn30P012A05P025F071R2_077.ab1 (0) 304 5 * Pass: 3 #reads #contigs (not counting singlets) 3 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 2 0 Gap # merges # failures size 4 1 0 13 1 0 Offset 0 3 Pass 4 Gap Score Pass: 4 #reads #contigs (not counting singlets) 3 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Read equivalence class histogram: 3 1 Chimera merges: Contig 1: 446 nodes 149 str. conn. components Path 1 UCD021F_B09_BG606762Sn30P012A05P025F071F2_077.ab1 1 9 UCD011F_D12_BG606762Sn30P012A05P025F071F1_090.ab1 9 32 UCD021F_B09_BG606762Sn30P012A05P025F071F2_077.ab1 31 58 UCD011F_D12_BG606762Sn30P012A05P025F071F1_090.ab1 58 62 UCD021F_B09_BG606762Sn30P012A05P025F071F2_077.ab1 61 66 UCD011F_D12_BG606762Sn30P012A05P025F071F1_090.ab1 66 70 UCD021F_B09_BG606762Sn30P012A05P025F071F2_077.ab1 69 98 UCD011F_D12_BG606762Sn30P012A05P025F071F1_090.ab1 98 103 UCD021F_B09_BG606762Sn30P012A05P025F071F2_077.ab1 102 Contig length: old 390, new 387 Contig length: old 387, new 387 New start: 0