No. words: 1115; after pruning: 1089


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
 -358  -705  0 50    223     S -358- -136
Fail: (1)  223   -1.5 -1.5 (1,1:705)  109  2.21 0.00 0.74  UCD004F_B03_BG608232AS01P012A03A091F1_029.ab1      571   706 (50)  C UCD004R_B03_BG608232AS01P012A03A091R1_029.ab1   (223)   136     2 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.5       0        1

Gap   # merges  # failures
 size
223       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    UCD004R_B03_BG608232AS01P012A03A091R1_029.ab1     1 
Contig length: old 359, new 359

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    UCD004F_B03_BG608232AS01P012A03A091F1_029.ab1     1 
Contig length: old 756, new 756