No. words: 1277; after pruning: 1251


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 5.6 (1,1:700)  448  3.07 0.00 0.19  UCD004F_C03_BG608232AS02P012A03A091F1_027.ab1      178   698 (54)  C UCD004R_C03_BG608232AS02P012A03A091R1_027.ab1   (1)   524     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1    UCD004F_C03_BG608232AS02P012A03A091F1_027.ab1     1 
  519  C UCD004R_C03_BG608232AS02P012A03A091R1_027.ab1   183 
  527    UCD004F_C03_BG608232AS02P012A03A091F1_027.ab1   527 
  547  C UCD004R_C03_BG608232AS02P012A03A091R1_027.ab1   155 
  555    UCD004F_C03_BG608232AS02P012A03A091F1_027.ab1   555 
  575  C UCD004R_C03_BG608232AS02P012A03A091R1_027.ab1   127 
  579    UCD004F_C03_BG608232AS02P012A03A091F1_027.ab1   579 
  595  C UCD004R_C03_BG608232AS02P012A03A091R1_027.ab1   107 
  599    UCD004F_C03_BG608232AS02P012A03A091F1_027.ab1   599 
  611  C UCD004R_C03_BG608232AS02P012A03A091R1_027.ab1    91 
  615    UCD004F_C03_BG608232AS02P012A03A091F1_027.ab1   615 
  639  C UCD004R_C03_BG608232AS02P012A03A091R1_027.ab1    63 
  643    UCD004F_C03_BG608232AS02P012A03A091F1_027.ab1   643 
  659  C UCD004R_C03_BG608232AS02P012A03A091R1_027.ab1    43 
  663    UCD004F_C03_BG608232AS02P012A03A091F1_027.ab1   663 
Contig length: old 752, new 752

Contig length: old 752, new 752
New start: 0