No. words: 1715; after pruning: 1689


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 14.2 (1,1:708)  673  0.00 0.00 0.14  UCD004F_F03_BG608232LD01P012A03A091F1_021.ab1        4   709 (125)  C UCD004R_F03_BG608232LD01P012A03A091R1_021.ab1   (176)   705     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1  C UCD004R_F03_BG608232LD01P012A03A091R1_021.ab1   881 
  180    UCD004F_F03_BG608232LD01P012A03A091F1_021.ab1     7 
  192  C UCD004R_F03_BG608232LD01P012A03A091R1_021.ab1   690 
  196    UCD004F_F03_BG608232LD01P012A03A091F1_021.ab1    23 
  240  C UCD004R_F03_BG608232LD01P012A03A091R1_021.ab1   642 
  244    UCD004F_F03_BG608232LD01P012A03A091F1_021.ab1    71 
  332  C UCD004R_F03_BG608232LD01P012A03A091R1_021.ab1   550 
  788    UCD004F_F03_BG608232LD01P012A03A091F1_021.ab1   615 
  800  C UCD004R_F03_BG608232LD01P012A03A091R1_021.ab1    82 
  804    UCD004F_F03_BG608232LD01P012A03A091F1_021.ab1   631 
  820  C UCD004R_F03_BG608232LD01P012A03A091R1_021.ab1    62 
  860    UCD004F_F03_BG608232LD01P012A03A091F1_021.ab1   687 
  872  C UCD004R_F03_BG608232LD01P012A03A091R1_021.ab1    11 
  876    UCD004F_F03_BG608232LD01P012A03A091F1_021.ab1   703 
Contig length: old 1006, new 1007

Contig length: old 1007, new 1007
New start: 0