No. words: 1537; after pruning: 1497


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Rjct: (2)    2   -5.9 -5.9 (1,1:715)  569  4.46 0.00 0.14  UCD004F_H03_BG608232LD03P012A03A091F1_017.ab1       23   717 (124)  C UCD004R_H03_BG608232LD03P012A03A091R1_017.ab1   (2)   694     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -20.3 (<20 part: -15.2 (#=30), >20:-5.1 (#=2); in HQ: -20.3, out HQ 0.0), match: 14.8  lead: -0.4  total: -5.9  569  4.46 0.00 0.14  UCD004F_H03_BG608232LD03P012A03A091F1_017.ab1       23   717 (124)  C UCD004R_H03_BG608232LD03P012A03A091R1_017.ab1   (2)   694     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-5.9       0        1

Gap   # merges  # failures
 size
 2       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    UCD004R_H03_BG608232LD03P012A03A091R1_017.ab1     1 
Contig length: old 696, new 696

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    UCD004F_H03_BG608232LD03P012A03A091F1_017.ab1     1 
Contig length: old 841, new 841