No. words: 1411; after pruning: 1385


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.0 (1,1:706)  537  0.52 0.00 0.17  UCD004F_A04_BG608232LD04P012A03A091F1_032.ab1      135   708 (130)  C UCD004R_A04_BG608232LD04P012A03A091R1_032.ab1   (0)   573     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1    UCD004F_A04_BG608232LD04P012A03A091F1_032.ab1     1 
  430  C UCD004R_A04_BG608232LD04P012A03A091R1_032.ab1   278 
  470    UCD004F_A04_BG608232LD04P012A03A091F1_032.ab1   470 
  478  C UCD004R_A04_BG608232LD04P012A03A091R1_032.ab1   230 
  558    UCD004F_A04_BG608232LD04P012A03A091F1_032.ab1   558 
  570  C UCD004R_A04_BG608232LD04P012A03A091R1_032.ab1   138 
  618    UCD004F_A04_BG608232LD04P012A03A091F1_032.ab1   618 
  626  C UCD004R_A04_BG608232LD04P012A03A091R1_032.ab1    82 
  630    UCD004F_A04_BG608232LD04P012A03A091F1_032.ab1   630 
  650  C UCD004R_A04_BG608232LD04P012A03A091R1_032.ab1    58 
  670    UCD004F_A04_BG608232LD04P012A03A091F1_032.ab1   670 
  701  C UCD004R_A04_BG608232LD04P012A03A091R1_032.ab1     8 
  705    UCD004F_A04_BG608232LD04P012A03A091F1_032.ab1   705 
Contig length: old 838, new 838

Contig length: old 838, new 838
New start: 0