No. words: 1376; after pruning: 1350


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 12.4 (1,1:717)  609  0.77 0.00 0.00  UCD004F_D04_BG608232LD07P012A03A091F1_026.ab1        4   650 (0)  C UCD004R_D04_BG608232LD07P012A03A091R1_026.ab1   (11)   715    69 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1  C UCD004R_D04_BG608232LD07P012A03A091R1_026.ab1   726 
   15    UCD004F_D04_BG608232LD07P012A03A091F1_026.ab1     7 
  236  C UCD004R_D04_BG608232LD07P012A03A091R1_026.ab1   491 
  248    UCD004F_D04_BG608232LD07P012A03A091F1_026.ab1   240 
  324  C UCD004R_D04_BG608232LD07P012A03A091R1_026.ab1   403 
  336    UCD004F_D04_BG608232LD07P012A03A091F1_026.ab1   328 
  476  C UCD004R_D04_BG608232LD07P012A03A091R1_026.ab1   251 
Contig length: old 726, new 726

Contig length: old 726, new 726
New start: 0 
S Change at: 56; seg lengths: entry 1, contig 1