No. words: 1180; after pruning: 1154


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 9.8 (1,1:636)  470  0.60 0.00 0.00  UCD027F_C03_BG608232Ta13P025A06P036B021F1_027.ab1      139   637 (40)  C UCD027R_C03_BG608232Ta13P025A06P036B021R1_027.ab1   (4)   499     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1    UCD027F_C03_BG608232Ta13P025A06P036B021F1_027.ab1     1 
  466  C UCD027R_C03_BG608232Ta13P025A06P036B021R1_027.ab1   172 
  470    UCD027F_C03_BG608232Ta13P025A06P036B021F1_027.ab1   470 
  490  C UCD027R_C03_BG608232Ta13P025A06P036B021R1_027.ab1   148 
  494    UCD027F_C03_BG608232Ta13P025A06P036B021F1_027.ab1   494 
  502  C UCD027R_C03_BG608232Ta13P025A06P036B021R1_027.ab1   136 
  510    UCD027F_C03_BG608232Ta13P025A06P036B021F1_027.ab1   510 
  526  C UCD027R_C03_BG608232Ta13P025A06P036B021R1_027.ab1   112 
  530    UCD027F_C03_BG608232Ta13P025A06P036B021F1_027.ab1   530 
  534  C UCD027R_C03_BG608232Ta13P025A06P036B021R1_027.ab1   104 
  542    UCD027F_C03_BG608232Ta13P025A06P036B021F1_027.ab1   542 
  554  C UCD027R_C03_BG608232Ta13P025A06P036B021R1_027.ab1    84 
  558    UCD027F_C03_BG608232Ta13P025A06P036B021F1_027.ab1   558 
  574  C UCD027R_C03_BG608232Ta13P025A06P036B021R1_027.ab1    64 
  578    UCD027F_C03_BG608232Ta13P025A06P036B021F1_027.ab1   578 
  597  C UCD027R_C03_BG608232Ta13P025A06P036B021R1_027.ab1    41 
  601    UCD027F_C03_BG608232Ta13P025A06P036B021F1_027.ab1   601 
Contig length: old 677, new 677

Contig length: old 677, new 677
New start: 0