No. words: 1293; after pruning: 1267


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.7 (1,1:577)  551  0.00 0.00 0.17  UCD027F_E03_BG608232Ta15P025A06P036B021F1_023.ab1        1   578 (62)  C UCD027R_E03_BG608232Ta15P025A06P036B021R1_023.ab1   (76)   577     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C UCD027R_E03_BG608232Ta15P025A06P036B021R1_023.ab1   653 
  108    UCD027F_E03_BG608232Ta15P025A06P036B021F1_023.ab1    32 
  112  C UCD027R_E03_BG608232Ta15P025A06P036B021R1_023.ab1   542 
  116    UCD027F_E03_BG608232Ta15P025A06P036B021F1_023.ab1    40 
  132  C UCD027R_E03_BG608232Ta15P025A06P036B021R1_023.ab1   522 
  136    UCD027F_E03_BG608232Ta15P025A06P036B021F1_023.ab1    60 
  168  C UCD027R_E03_BG608232Ta15P025A06P036B021R1_023.ab1   486 
  172    UCD027F_E03_BG608232Ta15P025A06P036B021F1_023.ab1    96 
  176  C UCD027R_E03_BG608232Ta15P025A06P036B021R1_023.ab1   478 
  208    UCD027F_E03_BG608232Ta15P025A06P036B021F1_023.ab1   132 
  220  C UCD027R_E03_BG608232Ta15P025A06P036B021R1_023.ab1   434 
  228    UCD027F_E03_BG608232Ta15P025A06P036B021F1_023.ab1   152 
  232  C UCD027R_E03_BG608232Ta15P025A06P036B021R1_023.ab1   422 
  252    UCD027F_E03_BG608232Ta15P025A06P036B021F1_023.ab1   176 
  304  C UCD027R_E03_BG608232Ta15P025A06P036B021R1_023.ab1   350 
  320    UCD027F_E03_BG608232Ta15P025A06P036B021F1_023.ab1   244 
  340  C UCD027R_E03_BG608232Ta15P025A06P036B021R1_023.ab1   314 
  344    UCD027F_E03_BG608232Ta15P025A06P036B021F1_023.ab1   268 
  380  C UCD027R_E03_BG608232Ta15P025A06P036B021R1_023.ab1   274 
  384    UCD027F_E03_BG608232Ta15P025A06P036B021F1_023.ab1   308 
  400  C UCD027R_E03_BG608232Ta15P025A06P036B021R1_023.ab1   254 
  408    UCD027F_E03_BG608232Ta15P025A06P036B021F1_023.ab1   332 
  444  C UCD027R_E03_BG608232Ta15P025A06P036B021R1_023.ab1   210 
  452    UCD027F_E03_BG608232Ta15P025A06P036B021F1_023.ab1   376 
  464  C UCD027R_E03_BG608232Ta15P025A06P036B021R1_023.ab1   190 
  476    UCD027F_E03_BG608232Ta15P025A06P036B021F1_023.ab1   400 
  492  C UCD027R_E03_BG608232Ta15P025A06P036B021R1_023.ab1   162 
  500    UCD027F_E03_BG608232Ta15P025A06P036B021F1_023.ab1   424 
  540  C UCD027R_E03_BG608232Ta15P025A06P036B021R1_023.ab1   114 
  560    UCD027F_E03_BG608232Ta15P025A06P036B021F1_023.ab1   484 
  568  C UCD027R_E03_BG608232Ta15P025A06P036B021R1_023.ab1    86 
  572    UCD027F_E03_BG608232Ta15P025A06P036B021F1_023.ab1   496 
  576  C UCD027R_E03_BG608232Ta15P025A06P036B021R1_023.ab1    78 
  588    UCD027F_E03_BG608232Ta15P025A06P036B021F1_023.ab1   512 
  608  C UCD027R_E03_BG608232Ta15P025A06P036B021R1_023.ab1    46 
  624    UCD027F_E03_BG608232Ta15P025A06P036B021F1_023.ab1   548 
Contig length: old 715, new 716

Contig length: old 716, new 716
New start: 0