No. words: 1324; after pruning: 1298


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.5 (1,1:618)  590  0.00 0.00 0.16  UCD027F_C04_BG608232Ta21P025A06P036B021F1_028.ab1        1   619 (47)  C UCD027R_C04_BG608232Ta21P025A06P036B021R1_028.ab1   (40)   618     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1  C UCD027R_C04_BG608232Ta21P025A06P036B021R1_028.ab1   658 
   45    UCD027F_C04_BG608232Ta21P025A06P036B021F1_028.ab1     5 
   49  C UCD027R_C04_BG608232Ta21P025A06P036B021R1_028.ab1   610 
   77    UCD027F_C04_BG608232Ta21P025A06P036B021F1_028.ab1    37 
  101  C UCD027R_C04_BG608232Ta21P025A06P036B021R1_028.ab1   558 
  105    UCD027F_C04_BG608232Ta21P025A06P036B021F1_028.ab1    65 
  193  C UCD027R_C04_BG608232Ta21P025A06P036B021R1_028.ab1   466 
  197    UCD027F_C04_BG608232Ta21P025A06P036B021F1_028.ab1   157 
  453  C UCD027R_C04_BG608232Ta21P025A06P036B021R1_028.ab1   206 
  457    UCD027F_C04_BG608232Ta21P025A06P036B021F1_028.ab1   417 
  473  C UCD027R_C04_BG608232Ta21P025A06P036B021R1_028.ab1   186 
  485    UCD027F_C04_BG608232Ta21P025A06P036B021F1_028.ab1   445 
  525  C UCD027R_C04_BG608232Ta21P025A06P036B021R1_028.ab1   134 
  557    UCD027F_C04_BG608232Ta21P025A06P036B021F1_028.ab1   517 
  569  C UCD027R_C04_BG608232Ta21P025A06P036B021R1_028.ab1    90 
  585    UCD027F_C04_BG608232Ta21P025A06P036B021F1_028.ab1   545 
  609  C UCD027R_C04_BG608232Ta21P025A06P036B021R1_028.ab1    50 
  613    UCD027F_C04_BG608232Ta21P025A06P036B021F1_028.ab1   573 
Contig length: old 705, new 706

Contig length: old 706, new 706
New start: 0