No. words: 1331; after pruning: 1305


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.7 (1,1:618)  595  0.00 0.00 0.00  UCD027F_B02_BG608232Td04P025A06P036B021F1_014.ab1        1   619 (49)  C UCD027R_B02_BG608232Td04P025A06P036B021R1_014.ab1   (44)   619     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C UCD027R_B02_BG608232Td04P025A06P036B021R1_014.ab1   663 
   50    UCD027F_B02_BG608232Td04P025A06P036B021F1_014.ab1     6 
   54  C UCD027R_B02_BG608232Td04P025A06P036B021R1_014.ab1   610 
   58    UCD027F_B02_BG608232Td04P025A06P036B021F1_014.ab1    14 
   86  C UCD027R_B02_BG608232Td04P025A06P036B021R1_014.ab1   578 
   90    UCD027F_B02_BG608232Td04P025A06P036B021F1_014.ab1    46 
  338  C UCD027R_B02_BG608232Td04P025A06P036B021R1_014.ab1   326 
  342    UCD027F_B02_BG608232Td04P025A06P036B021F1_014.ab1   298 
  434  C UCD027R_B02_BG608232Td04P025A06P036B021R1_014.ab1   230 
  450    UCD027F_B02_BG608232Td04P025A06P036B021F1_014.ab1   406 
  454  C UCD027R_B02_BG608232Td04P025A06P036B021R1_014.ab1   210 
  502    UCD027F_B02_BG608232Td04P025A06P036B021F1_014.ab1   458 
  518  C UCD027R_B02_BG608232Td04P025A06P036B021R1_014.ab1   146 
  546    UCD027F_B02_BG608232Td04P025A06P036B021F1_014.ab1   502 
  550  C UCD027R_B02_BG608232Td04P025A06P036B021R1_014.ab1   114 
  562    UCD027F_B02_BG608232Td04P025A06P036B021F1_014.ab1   518 
  570  C UCD027R_B02_BG608232Td04P025A06P036B021R1_014.ab1    94 
  590    UCD027F_B02_BG608232Td04P025A06P036B021F1_014.ab1   546 
  606  C UCD027R_B02_BG608232Td04P025A06P036B021R1_014.ab1    58 
  614    UCD027F_B02_BG608232Td04P025A06P036B021F1_014.ab1   570 
  646  C UCD027R_B02_BG608232Td04P025A06P036B021R1_014.ab1    18 
  650    UCD027F_B02_BG608232Td04P025A06P036B021F1_014.ab1   606 
Contig length: old 712, new 712

Contig length: old 712, new 712
New start: 0