No. words: 1239; after pruning: 1213


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:607)  539  0.52 0.00 0.17  UCD027F_C02_BG608232Td05P025A06P036B021F1_012.ab1       34   609 (55)  C UCD027R_C02_BG608232Td05P025A06P036B021R1_012.ab1   (0)   575     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1    UCD027F_C02_BG608232Td05P025A06P036B021F1_012.ab1     1 
  399  C UCD027R_C02_BG608232Td05P025A06P036B021R1_012.ab1   210 
  403    UCD027F_C02_BG608232Td05P025A06P036B021F1_012.ab1   403 
  427  C UCD027R_C02_BG608232Td05P025A06P036B021R1_012.ab1   182 
  435    UCD027F_C02_BG608232Td05P025A06P036B021F1_012.ab1   435 
  443  C UCD027R_C02_BG608232Td05P025A06P036B021R1_012.ab1   166 
  463    UCD027F_C02_BG608232Td05P025A06P036B021F1_012.ab1   463 
  467  C UCD027R_C02_BG608232Td05P025A06P036B021R1_012.ab1   142 
  539    UCD027F_C02_BG608232Td05P025A06P036B021F1_012.ab1   539 
  547  C UCD027R_C02_BG608232Td05P025A06P036B021R1_012.ab1    62 
  575    UCD027F_C02_BG608232Td05P025A06P036B021F1_012.ab1   575 
  579  C UCD027R_C02_BG608232Td05P025A06P036B021R1_012.ab1    30 
  587    UCD027F_C02_BG608232Td05P025A06P036B021F1_012.ab1   587 
  598  C UCD027R_C02_BG608232Td05P025A06P036B021R1_012.ab1    12 
  606    UCD027F_C02_BG608232Td05P025A06P036B021F1_012.ab1   606 
Contig length: old 664, new 664

Contig length: old 664, new 664
New start: 0 
S Change at: 42; seg lengths: entry 1, contig 1