No. words: 1342; after pruning: 1316


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.8 (1,1:625)  597  0.00 0.00 0.16  UCD027F_D02_BG608232Td06P025A06P036B021F1_010.ab1        1   626 (41)  C UCD027R_D02_BG608232Td06P025A06P036B021R1_010.ab1   (50)   625     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C UCD027R_D02_BG608232Td06P025A06P036B021R1_010.ab1   675 
   55    UCD027F_D02_BG608232Td06P025A06P036B021F1_010.ab1     5 
   59  C UCD027R_D02_BG608232Td06P025A06P036B021R1_010.ab1   617 
   67    UCD027F_D02_BG608232Td06P025A06P036B021F1_010.ab1    17 
  111  C UCD027R_D02_BG608232Td06P025A06P036B021R1_010.ab1   565 
  115    UCD027F_D02_BG608232Td06P025A06P036B021F1_010.ab1    65 
  463  C UCD027R_D02_BG608232Td06P025A06P036B021R1_010.ab1   213 
  503    UCD027F_D02_BG608232Td06P025A06P036B021F1_010.ab1   453 
  543  C UCD027R_D02_BG608232Td06P025A06P036B021R1_010.ab1   133 
  551    UCD027F_D02_BG608232Td06P025A06P036B021F1_010.ab1   501 
  579  C UCD027R_D02_BG608232Td06P025A06P036B021R1_010.ab1    97 
  587    UCD027F_D02_BG608232Td06P025A06P036B021F1_010.ab1   537 
  611  C UCD027R_D02_BG608232Td06P025A06P036B021R1_010.ab1    65 
  627    UCD027F_D02_BG608232Td06P025A06P036B021F1_010.ab1   577 
Contig length: old 716, new 717

Contig length: old 717, new 717
New start: 0