No. words: 775; after pruning: 749


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    3   -4.2 -4.2 (1,1:532)  108 11.29 0.00 0.00  UCD027F_B06_BG608232Td08P025C06P036B021F1_046.ab1      348   533 (53)  C UCD027R_B06_BG608232Td08P025C06P036B021R1_046.ab1   (3)   186     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -7.5 (<20 part: -7.5 (#=21), >20:0.0 (#=0); in HQ: -7.5, out HQ 0.0), match: 3.7  lead: -0.4  total: -4.2  108 11.29 0.00 0.00  UCD027F_B06_BG608232Td08P025C06P036B021F1_046.ab1      348   533 (53)  C UCD027R_B06_BG608232Td08P025C06P036B021R1_046.ab1   (3)   186     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.2       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  50 nodes

 27 str. conn. components

Path
    1    UCD027F_B06_BG608232Td08P025C06P036B021F1_046.ab1     1 
  520  C UCD027R_B06_BG608232Td08P025C06P036B021R1_046.ab1    14 
  528    UCD027F_B06_BG608232Td08P025C06P036B021F1_046.ab1   528 
Contig length: old 586, new 586

Contig length: old 586, new 586
New start: 0