No. words: 1013; after pruning: 987


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.4 (1,1:453)  446  0.00 0.00 0.00  UCD023F_E10_BM136927AT01P028D06P028D121F1_072.ab1        1   451 (61)  C UCD023R_E10_BM136927AT01P028D06P028D121R1_072.ab1   (47)   454     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C UCD023R_E10_BM136927AT01P028D06P028D121R1_072.ab1   501 
  147    UCD023F_E10_BM136927AT01P028D06P028D121F1_072.ab1   100 
  151  C UCD023R_E10_BM136927AT01P028D06P028D121R1_072.ab1   351 
  211    UCD023F_E10_BM136927AT01P028D06P028D121F1_072.ab1   164 
  279  C UCD023R_E10_BM136927AT01P028D06P028D121R1_072.ab1   223 
  395    UCD023F_E10_BM136927AT01P028D06P028D121F1_072.ab1   348 
  423  C UCD023R_E10_BM136927AT01P028D06P028D121R1_072.ab1    79 
  443    UCD023F_E10_BM136927AT01P028D06P028D121F1_072.ab1   396 
  467  C UCD023R_E10_BM136927AT01P028D06P028D121R1_072.ab1    35 
  471    UCD023F_E10_BM136927AT01P028D06P028D121F1_072.ab1   424 
Contig length: old 559, new 559

Contig length: old 559, new 559
New start: 0