No. words: 1008; after pruning: 982


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 8.4 (1,1:453)  435  0.45 0.00 0.00  UCD023F_F10_BM136927AT02P028D06P028D121F1_070.ab1        6   451 (59)  C UCD023R_F10_BM136927AT02P028D06P028D121R1_070.ab1   (49)   449     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C UCD023R_F10_BM136927AT02P028D06P028D121R1_070.ab1   498 
   59    UCD023F_F10_BM136927AT02P028D06P028D121F1_070.ab1    15 
  105  C UCD023R_F10_BM136927AT02P028D06P028D121R1_070.ab1   394 
  113    UCD023F_F10_BM136927AT02P028D06P028D121F1_070.ab1    69 
  117  C UCD023R_F10_BM136927AT02P028D06P028D121R1_070.ab1   382 
  121    UCD023F_F10_BM136927AT02P028D06P028D121F1_070.ab1    77 
  129  C UCD023R_F10_BM136927AT02P028D06P028D121R1_070.ab1   370 
  141    UCD023F_F10_BM136927AT02P028D06P028D121F1_070.ab1    97 
  145  C UCD023R_F10_BM136927AT02P028D06P028D121R1_070.ab1   354 
  161    UCD023F_F10_BM136927AT02P028D06P028D121F1_070.ab1   117 
  169  C UCD023R_F10_BM136927AT02P028D06P028D121R1_070.ab1   330 
  173    UCD023F_F10_BM136927AT02P028D06P028D121F1_070.ab1   129 
  193  C UCD023R_F10_BM136927AT02P028D06P028D121R1_070.ab1   306 
  209    UCD023F_F10_BM136927AT02P028D06P028D121F1_070.ab1   165 
  213  C UCD023R_F10_BM136927AT02P028D06P028D121R1_070.ab1   286 
  409    UCD023F_F10_BM136927AT02P028D06P028D121F1_070.ab1   365 
  413  C UCD023R_F10_BM136927AT02P028D06P028D121R1_070.ab1    86 
  457    UCD023F_F10_BM136927AT02P028D06P028D121F1_070.ab1   413 
  461  C UCD023R_F10_BM136927AT02P028D06P028D121R1_070.ab1    38 
  489    UCD023F_F10_BM136927AT02P028D06P028D121F1_070.ab1   445 
Contig length: old 554, new 554

Contig length: old 554, new 554
New start: 0 
S Change at: 55; seg lengths: entry 1, contig 1