No. words: 1182; after pruning: 1156


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.4 (1,1:464)  454  0.00 0.00 0.22  UCD023F_G10_BM136927LD01P028D06P028D121F1_068.ab1        1   462 (185)  C UCD023R_G10_BM136927LD01P028D06P028D121R1_068.ab1   (71)   464     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C UCD023R_G10_BM136927LD01P028D06P028D121R1_068.ab1   535 
   95    UCD023F_G10_BM136927LD01P028D06P028D121F1_068.ab1    24 
   99  C UCD023R_G10_BM136927LD01P028D06P028D121R1_068.ab1   437 
  107    UCD023F_G10_BM136927LD01P028D06P028D121F1_068.ab1    36 
  111  C UCD023R_G10_BM136927LD01P028D06P028D121R1_068.ab1   425 
  115    UCD023F_G10_BM136927LD01P028D06P028D121F1_068.ab1    44 
  123  C UCD023R_G10_BM136927LD01P028D06P028D121R1_068.ab1   413 
  131    UCD023F_G10_BM136927LD01P028D06P028D121F1_068.ab1    60 
  135  C UCD023R_G10_BM136927LD01P028D06P028D121R1_068.ab1   401 
  167    UCD023F_G10_BM136927LD01P028D06P028D121F1_068.ab1    96 
  171  C UCD023R_G10_BM136927LD01P028D06P028D121R1_068.ab1   365 
  187    UCD023F_G10_BM136927LD01P028D06P028D121F1_068.ab1   116 
  211  C UCD023R_G10_BM136927LD01P028D06P028D121R1_068.ab1   325 
  219    UCD023F_G10_BM136927LD01P028D06P028D121F1_068.ab1   148 
  343  C UCD023R_G10_BM136927LD01P028D06P028D121R1_068.ab1   193 
  383    UCD023F_G10_BM136927LD01P028D06P028D121F1_068.ab1   312 
  407  C UCD023R_G10_BM136927LD01P028D06P028D121R1_068.ab1   129 
  411    UCD023F_G10_BM136927LD01P028D06P028D121F1_068.ab1   340 
  451  C UCD023R_G10_BM136927LD01P028D06P028D121R1_068.ab1    85 
  455    UCD023F_G10_BM136927LD01P028D06P028D121F1_068.ab1   384 
Contig length: old 717, new 718

Contig length: old 718, new 718
New start: 0