No. words: 1192; after pruning: 1166


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.2 (1,1:464)  451  0.22 0.00 0.22  UCD023F_H10_BM136927LD02P028D06P028D121F1_066.ab1        1   462 (173)  C UCD023R_H10_BM136927LD02P028D06P028D121R1_066.ab1   (93)   464     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C UCD023R_H10_BM136927LD02P028D06P028D121R1_066.ab1   557 
  113    UCD023F_H10_BM136927LD02P028D06P028D121F1_066.ab1    20 
  121  C UCD023R_H10_BM136927LD02P028D06P028D121R1_066.ab1   437 
  137    UCD023F_H10_BM136927LD02P028D06P028D121F1_066.ab1    44 
  145  C UCD023R_H10_BM136927LD02P028D06P028D121R1_066.ab1   413 
  161    UCD023F_H10_BM136927LD02P028D06P028D121F1_066.ab1    68 
  177  C UCD023R_H10_BM136927LD02P028D06P028D121R1_066.ab1   381 
  241    UCD023F_H10_BM136927LD02P028D06P028D121F1_066.ab1   148 
  365  C UCD023R_H10_BM136927LD02P028D06P028D121R1_066.ab1   193 
  441    UCD023F_H10_BM136927LD02P028D06P028D121F1_066.ab1   348 
  473  C UCD023R_H10_BM136927LD02P028D06P028D121R1_066.ab1    85 
  481    UCD023F_H10_BM136927LD02P028D06P028D121F1_066.ab1   388 
Contig length: old 727, new 728

Contig length: old 728, new 728
New start: 0