No. words: 1261; after pruning: 1235


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:474)  471  0.00 0.00 0.00  UCD023F_E11_BM136927LD03P028D06P028D121F1_087.ab1        1   475 (169)  C UCD023R_E11_BM136927LD03P028D06P028D121R1_087.ab1   (142)   475     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C UCD023R_E11_BM136927LD03P028D06P028D121R1_087.ab1   617 
  510    UCD023F_E11_BM136927LD03P028D06P028D121F1_087.ab1   368 
  534  C UCD023R_E11_BM136927LD03P028D06P028D121R1_087.ab1    84 
  574    UCD023F_E11_BM136927LD03P028D06P028D121F1_087.ab1   432 
Contig length: old 786, new 786

Contig length: old 786, new 786
New start: 0