No. words: 1064; after pruning: 1038


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 8.3 (1,1:476)  413  0.00 0.00 0.00  UCD023F_G11_BM136927LD05P028D06P028D121F1_083.ab1       59   475 (170)  C UCD023R_G11_BM136927LD05P028D06P028D121R1_083.ab1   (0)   419     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  210 nodes

 107 str. conn. components

Path
    1    UCD023F_G11_BM136927LD05P028D06P028D121F1_083.ab1     1 
   94  C UCD023R_G11_BM136927LD05P028D06P028D121R1_083.ab1   384 
  126    UCD023F_G11_BM136927LD05P028D06P028D121F1_083.ab1   126 
  154  C UCD023R_G11_BM136927LD05P028D06P028D121R1_083.ab1   324 
  158    UCD023F_G11_BM136927LD05P028D06P028D121F1_083.ab1   158 
  166  C UCD023R_G11_BM136927LD05P028D06P028D121R1_083.ab1   312 
  170    UCD023F_G11_BM136927LD05P028D06P028D121F1_083.ab1   170 
  182  C UCD023R_G11_BM136927LD05P028D06P028D121R1_083.ab1   296 
  342    UCD023F_G11_BM136927LD05P028D06P028D121F1_083.ab1   342 
  366  C UCD023R_G11_BM136927LD05P028D06P028D121R1_083.ab1   112 
  370    UCD023F_G11_BM136927LD05P028D06P028D121F1_083.ab1   370 
  398  C UCD023R_G11_BM136927LD05P028D06P028D121R1_083.ab1    80 
  414    UCD023F_G11_BM136927LD05P028D06P028D121F1_083.ab1   414 
  442  C UCD023R_G11_BM136927LD05P028D06P028D121R1_083.ab1    36 
  446    UCD023F_G11_BM136927LD05P028D06P028D121F1_083.ab1   446 
Contig length: old 645, new 645

Contig length: old 645, new 645
New start: 0