No. words: 1233; after pruning: 1207


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.8 (1,1:455)  447  0.00 0.00 0.22  UCD023F_H11_BM136927LD06P028D06P028D121F1_081.ab1        1   456 (196)  C UCD023R_H11_BM136927LD06P028D06P028D121R1_081.ab1   (126)   455     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C UCD023R_H11_BM136927LD06P028D06P028D121R1_081.ab1   581 
  159    UCD023F_H11_BM136927LD06P028D06P028D121F1_081.ab1    33 
  167  C UCD023R_H11_BM136927LD06P028D06P028D121R1_081.ab1   415 
  179    UCD023F_H11_BM136927LD06P028D06P028D121F1_081.ab1    53 
  199  C UCD023R_H11_BM136927LD06P028D06P028D121R1_081.ab1   383 
  207    UCD023F_H11_BM136927LD06P028D06P028D121F1_081.ab1    81 
  219  C UCD023R_H11_BM136927LD06P028D06P028D121R1_081.ab1   363 
  235    UCD023F_H11_BM136927LD06P028D06P028D121F1_081.ab1   109 
  239  C UCD023R_H11_BM136927LD06P028D06P028D121R1_081.ab1   343 
  255    UCD023F_H11_BM136927LD06P028D06P028D121F1_081.ab1   129 
  447  C UCD023R_H11_BM136927LD06P028D06P028D121R1_081.ab1   135 
  471    UCD023F_H11_BM136927LD06P028D06P028D121F1_081.ab1   345 
  479  C UCD023R_H11_BM136927LD06P028D06P028D121R1_081.ab1   103 
  483    UCD023F_H11_BM136927LD06P028D06P028D121F1_081.ab1   357 
Contig length: old 777, new 778

Contig length: old 778, new 778
New start: 0