No. words: 1203; after pruning: 1177


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:442)  435  0.00 0.00 0.23  UCD023F_B12_BM136927LD08P028D06P028D121F1_094.ab1        1   443 (191)  C UCD023R_B12_BM136927LD08P028D06P028D121R1_094.ab1   (127)   442     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C UCD023R_B12_BM136927LD08P028D06P028D121R1_094.ab1   569 
  455    UCD023F_B12_BM136927LD08P028D06P028D121F1_094.ab1   328 
  463  C UCD023R_B12_BM136927LD08P028D06P028D121R1_094.ab1   107 
  471    UCD023F_B12_BM136927LD08P028D06P028D121F1_094.ab1   344 
Contig length: old 760, new 761

Contig length: old 761, new 761
New start: 0