No. words: 1237; after pruning: 1211


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.2 (1,1:458)  456  0.00 0.00 0.00  UCD023F_C12_BM136927LD09P028D06P028D121F1_092.ab1        1   459 (192)  C UCD023R_C12_BM136927LD09P028D06P028D121R1_092.ab1   (127)   459     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C UCD023R_C12_BM136927LD09P028D06P028D121R1_092.ab1   586 
  263    UCD023F_C12_BM136927LD09P028D06P028D121F1_092.ab1   136 
  279  C UCD023R_C12_BM136927LD09P028D06P028D121R1_092.ab1   308 
  475    UCD023F_C12_BM136927LD09P028D06P028D121F1_092.ab1   348 
  483  C UCD023R_C12_BM136927LD09P028D06P028D121R1_092.ab1   104 
  487    UCD023F_C12_BM136927LD09P028D06P028D121F1_092.ab1   360 
  507  C UCD023R_C12_BM136927LD09P028D06P028D121R1_092.ab1    80 
  519    UCD023F_C12_BM136927LD09P028D06P028D121F1_092.ab1   392 
Contig length: old 778, new 778

Contig length: old 778, new 778
New start: 0