No. words: 1249; after pruning: 1223


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.2 (1,1:458)  456  0.00 0.00 0.00  UCD023F_D12_BM136927LD10P028D06P028D121F1_090.ab1        1   459 (192)  C UCD023R_D12_BM136927LD10P028D06P028D121R1_090.ab1   (139)   459     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C UCD023R_D12_BM136927LD10P028D06P028D121R1_090.ab1   598 
  143    UCD023F_D12_BM136927LD10P028D06P028D121F1_090.ab1     4 
  147  C UCD023R_D12_BM136927LD10P028D06P028D121R1_090.ab1   452 
  159    UCD023F_D12_BM136927LD10P028D06P028D121F1_090.ab1    20 
  167  C UCD023R_D12_BM136927LD10P028D06P028D121R1_090.ab1   432 
  183    UCD023F_D12_BM136927LD10P028D06P028D121F1_090.ab1    44 
  191  C UCD023R_D12_BM136927LD10P028D06P028D121R1_090.ab1   408 
  207    UCD023F_D12_BM136927LD10P028D06P028D121F1_090.ab1    68 
  227  C UCD023R_D12_BM136927LD10P028D06P028D121R1_090.ab1   372 
  235    UCD023F_D12_BM136927LD10P028D06P028D121F1_090.ab1    96 
  239  C UCD023R_D12_BM136927LD10P028D06P028D121R1_090.ab1   360 
  255    UCD023F_D12_BM136927LD10P028D06P028D121F1_090.ab1   116 
  295  C UCD023R_D12_BM136927LD10P028D06P028D121R1_090.ab1   304 
  303    UCD023F_D12_BM136927LD10P028D06P028D121F1_090.ab1   164 
  411  C UCD023R_D12_BM136927LD10P028D06P028D121R1_090.ab1   188 
  455    UCD023F_D12_BM136927LD10P028D06P028D121F1_090.ab1   316 
  471  C UCD023R_D12_BM136927LD10P028D06P028D121R1_090.ab1   128 
  483    UCD023F_D12_BM136927LD10P028D06P028D121F1_090.ab1   344 
  519  C UCD023R_D12_BM136927LD10P028D06P028D121R1_090.ab1    80 
  531    UCD023F_D12_BM136927LD10P028D06P028D121F1_090.ab1   392 
Contig length: old 790, new 790

Contig length: old 790, new 790
New start: 0