No. words: 1218; after pruning: 1192


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:442)  435  0.00 0.00 0.23  UCD023F_E12_BM136927LD11P028D06P028D121F1_088.ab1        1   443 (195)  C UCD023R_E12_BM136927LD11P028D06P028D121R1_088.ab1   (138)   442     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C UCD023R_E12_BM136927LD11P028D06P028D121R1_088.ab1   580 
  186    UCD023F_E12_BM136927LD11P028D06P028D121F1_088.ab1    48 
  198  C UCD023R_E12_BM136927LD11P028D06P028D121R1_088.ab1   383 
  206    UCD023F_E12_BM136927LD11P028D06P028D121F1_088.ab1    68 
  218  C UCD023R_E12_BM136927LD11P028D06P028D121R1_088.ab1   363 
  254    UCD023F_E12_BM136927LD11P028D06P028D121F1_088.ab1   116 
  278  C UCD023R_E12_BM136927LD11P028D06P028D121R1_088.ab1   303 
  282    UCD023F_E12_BM136927LD11P028D06P028D121F1_088.ab1   144 
  446  C UCD023R_E12_BM136927LD11P028D06P028D121R1_088.ab1   135 
  466    UCD023F_E12_BM136927LD11P028D06P028D121F1_088.ab1   328 
  478  C UCD023R_E12_BM136927LD11P028D06P028D121R1_088.ab1   103 
  482    UCD023F_E12_BM136927LD11P028D06P028D121F1_088.ab1   344 
Contig length: old 775, new 776

Contig length: old 776, new 776
New start: 0