No. words: 999; after pruning: 973


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.8 (1,1:450)  439  0.00 0.22 0.00  UCD023F_B10_BM136927TU02P028D06P028D121F1_078.ab1        1   448 (54)  C UCD023R_B10_BM136927TU02P028D06P028D121R1_078.ab1   (45)   452     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C UCD023R_B10_BM136927TU02P028D06P028D121R1_078.ab1   497 
  142    UCD023F_B10_BM136927TU02P028D06P028D121F1_078.ab1    96 
  146  C UCD023R_B10_BM136927TU02P028D06P028D121R1_078.ab1   352 
  182    UCD023F_B10_BM136927TU02P028D06P028D121F1_078.ab1   136 
  186  C UCD023R_B10_BM136927TU02P028D06P028D121R1_078.ab1   312 
  190    UCD023F_B10_BM136927TU02P028D06P028D121F1_078.ab1   144 
  198  C UCD023R_B10_BM136927TU02P028D06P028D121R1_078.ab1   300 
  206    UCD023F_B10_BM136927TU02P028D06P028D121F1_078.ab1   160 
  278  C UCD023R_B10_BM136927TU02P028D06P028D121R1_078.ab1   220 
  374    UCD023F_B10_BM136927TU02P028D06P028D121F1_078.ab1   328 
  382  C UCD023R_B10_BM136927TU02P028D06P028D121R1_078.ab1   116 
  390    UCD023F_B10_BM136927TU02P028D06P028D121F1_078.ab1   344 
Contig length: old 548, new 548

Contig length: old 548, new 548
New start: 0