No. words: 1292; after pruning: 1252


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:620)  604  0.48 0.00 0.00  UCW005F_C08_BE352592At01P002D04D101F1_054.ab1        1   621 (21)  C UCW005R_C08_BE352592At01P002D04D101R1_054.ab1   (29)   621     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1  C UCW005R_C08_BE352592At01P002D04D101R1_054.ab1   650 
   33    UCW005F_C08_BE352592At01P002D04D101F1_054.ab1     4 
   41  C UCW005R_C08_BE352592At01P002D04D101R1_054.ab1   610 
   49    UCW005F_C08_BE352592At01P002D04D101F1_054.ab1    20 
  266  C UCW005R_C08_BE352592At01P002D04D101R1_054.ab1   385 
  270    UCW005F_C08_BE352592At01P002D04D101F1_054.ab1   241 
  310  C UCW005R_C08_BE352592At01P002D04D101R1_054.ab1   341 
  314    UCW005F_C08_BE352592At01P002D04D101F1_054.ab1   285 
  346  C UCW005R_C08_BE352592At01P002D04D101R1_054.ab1   305 
  358    UCW005F_C08_BE352592At01P002D04D101F1_054.ab1   329 
  362  C UCW005R_C08_BE352592At01P002D04D101R1_054.ab1   289 
  366    UCW005F_C08_BE352592At01P002D04D101F1_054.ab1   337 
  374  C UCW005R_C08_BE352592At01P002D04D101R1_054.ab1   277 
  378    UCW005F_C08_BE352592At01P002D04D101F1_054.ab1   349 
  386  C UCW005R_C08_BE352592At01P002D04D101R1_054.ab1   265 
  478    UCW005F_C08_BE352592At01P002D04D101F1_054.ab1   449 
  482  C UCW005R_C08_BE352592At01P002D04D101R1_054.ab1   169 
  490    UCW005F_C08_BE352592At01P002D04D101F1_054.ab1   461 
  494  C UCW005R_C08_BE352592At01P002D04D101R1_054.ab1   157 
  646    UCW005F_C08_BE352592At01P002D04D101F1_054.ab1   617 
Contig length: old 671, new 671

Contig length: old 671, new 671
New start: 0